PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00017542-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family NF-YB
Protein Properties Length: 131aa    MW: 14574.5 Da    PI: 5.9093
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00017542-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB162.27.5e-51194194
                  NF-YB  1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90
                           +++q+r++ ianvsrimkk lP na isk+aketvqecvsefisfvt+easdkcqrekrktingddllwa++tlGf++yv+plk yl+ y
  SMil_00017542-RA_Salv  1 MKDQERVVAIANVSRIMKKSLPPNANISKEAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFQNYVDPLKDYLTTY 90
                           589*************************************************************************************** PP

                  NF-YB 91 rele 94
                           r++ 
  SMil_00017542-RA_Salv 91 RDTS 94
                           *975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.108.9E-46295IPR009072Histone-fold
SuperFamilySSF471131.61E-33593IPR009072Histone-fold
PfamPF008084.4E-251071IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006159.2E-193553No hitNo description
PROSITE patternPS0068503854IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006159.2E-195472No hitNo description
PRINTSPR006159.2E-197391No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MKDQERVVAI ANVSRIMKKS LPPNANISKE AKETVQECVS EFISFVTGEA SDKCQREKRK  60
TINGDDLLWA MTTLGFQNYV DPLKDYLTTY RDTSSPIHDK TKIATANPSF LQGFTSDAGG  120
VVIEFATSSW C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-43192192Transcription factor HapC (Eurofung)
4g92_B2e-43192192Transcription factor HapC (Eurofung)
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009342812.19e-53PREDICTED: nuclear transcription factor Y subunit B-3-like
SwissprotO233102e-51NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBLA0A067KTU32e-52A0A067KTU3_JATCU; Uncharacterized protein
TrEMBLA0A151TKQ32e-52A0A151TKQ3_CAJCA; Nuclear transcription factor Y subunit B-3
TrEMBLA0A067F1F42e-52A0A067F1F4_CITSI; Uncharacterized protein
TrEMBLV4SKW92e-52V4SKW9_9R
TrEMBLA0A0A0KXV62e-52A0A0A0KXV6_CUCSA; Uncharacterized protein
STRINGGLYMA05G31681.18e-51(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.19e-53nuclear factor Y, subunit B3